Rest in peace nanobacteria, you were not alive after all
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Mystery particles made of minerals and proteins may still cause disease

Nanobacteria, extremely tiny “microorganisms” that have sparked controversy and may cause disease, have been declared dead. Again.

Some say the nanobacteria were never really alive. Once touted as the world’s smallest living organisms, and even an entirely new form of life, the entities are actually nothing more than sub-microscopic balls of minerals and proteins, independent teams of scientists in Taiwan and France report.

Surviving the nanobacteria is their “father,” Robert Folk, a geologist from the University of Texas at Austin, who discovered them in deposits from Italian hot springs in the early 1990s. Folk and his colleagues have since found the objects, which are a thousandth the size of common bacteria such as E. coli, in sedimentary mineral deposits ranging from limestone to iron oxides to silicates. The microbes may be major players in eroding rocks to make soil, Folk believes.

Initial evidence for nanobacteria sparked excitement among many microbiologists, geologists and other researchers. Some experts were skeptical that the ingredients to make a living cell could be crammed into such a tiny package. DNA is 2 nanometers wide, and some proteins are as large as the proposed size of nanobacteria, 80 to 500 nanometers. But nanobacteria have been cultured in laboratories and seen to grow in number, albeit slowly.

Finnish researchers found nanobacteria in human and cow blood about the time that Folk discovered the organisms in rocks. Since then, nanobacteria have been linked to kidney stone and gallstone formation (SN: 8/1/98, p. 75), polycystic kidney diseases, rheumatoid arthritis, some cancers, co-infection with HIV, Alzheimer’s disease and chronic prostatitis. They have also been implicated in hardening of the arteries and aging.

The discovery of what appeared to be evidence of nanobacteria in a Martian meteorite (SN: 8/10/96 p. 84) sparked extreme reactions from people who were excited about a new form of life (especially one that might have lived on Mars) and people who doubted the existence of nanoscale living organisms.

“It had the optimists turning cartwheels and the naysayers enraged, and it’s stayed the same ever since,” Folk says.

John Ding-E Young of Chang Gung University in Taiwan believed in nanobacteria so much that he and graduate student Jan Martel embarked on a series of experiments to prove that the microorganisms couldn’t be just mineral deposits.

“I really wanted these people to be right,” Young says. Instead, the team found just the opposite.

Calcium minerals (found in seashells, eggshells and marble) and calcium phosphate (the stuff that bones are made of) are thought to compose nanobacteria’s crusty exterior. When the researchers made calcium carbonate in a solution used to nourish cells, the mineral formed round particles that looked like the nanobacteria found in blood and rocks. Some of the particles even resembled bacteria in the act of reproducing.

Then the researchers made the calcium carbonate particles grow by seeding the solution with human blood serum—a common ingredient in solutions used to grow cells—and incubating the solution with carbon dioxide. More tiny calcium particles formed over the next few days, similar to the slow reproduction time of nanobacteria.

A protein called albumin in the blood serum seems to seed nanoparticles but keeps the calcium carbonate from forming crystals, Young and Martel reported in the April 8 Proceedings of the National Academy of Sciences.

Working independently, a group of researchers in France also showed that nanobacteria aren’t living organisms.

“These things can be replicated, but we quickly found that they aren’t bacteria at all,” says Didier Raoult, a microbiologist at the National Center for Scientific Research in Marseille, France.

In a study published February 15 in the online journal PLoS Pathogens, Raoult and his colleagues described nanobacteria as complexes of minerals and a protein called fetuin. Fetuin prevents minerals from forming crystals but may aid in clumping calcium molecules into the hollow spheres characteristic of nanobacteria.

But the particles can “infect” other solutions, producing more nanobacteria. “There is something transmissible,” Raoult says. “I don’t know why, and I don’t know what it is. It’s not living.” He theorizes that nanobacteria, which he dubbed nanons, may work like infectious proteins called prions, which cause mad cow disease, scrapie in sheep and several human brain diseases.

This is not the first time the bell has tolled for nanobacteria. A report in 2000 showed that the entities lack DNA. “In fact, there’s no nucleic acid at all,” Raoult says.

Folk concedes that the two groups “did a good job” of showing that the particular nanobacteria they studied are nonliving. But the organisms are so diverse that “one explanation is obviously not going to fit all.” If the groups had investigated some of the nanobacteria that he has collected, they would find a different story, he says.

“Some are shaped like kidney beans. These are not shapes that minerals take. It’s clearly biological,” Folk says.

But even researchers who believe nanobacteria may cause disease had already started edging away from the idea that they are minuscule bacteria, even before the latest publications.

“For me it’s not important if they are living or not,” says Andrei Sommer of the University of Ulm in Germany. “It’s more important to focus on their clear link to disease and how to eliminate them.” Wrangling over whether nanobacteria are alive or dead is “only blocking the brain and blocking action,” Sommer says.

Sommer and his colleague Dan Zhu isolated nanobacteria from fluid found in the joints of people with arthritis. The researchers described their technique in an article that appeared online April 2 in Environmental Science & Technology.

Those who study nanobacteria are used to controversy. “We hear, ‘You’re studying something that doesn’t exist,’” says Virginia Miller, a physiologist at the Mayo Clinic Medical School in Rochester, Minn., who studies “self-replicating calcifying nanoparticles” and their link to disease. Others have called the particles living nanovesicles or nanobiota.

“We’re just beginning to understand how particles at the nanoscale interact with cells,” Miller says. “It would be a very sad thing if these two papers capped that avenue of research. We’re just on the brink of understanding how these particles participate in disease.”

Young isn’t ready to bury nanobacteria yet, either. “My thinking is that these structures are not only real, but they are important,” he says.

But if the particles aren’t itty-bitty bacteria, scientists have to decide what to call them. “It’s nonsense to use the name nanobacteria,” Sommer says. “At the same time, it’s unfair not to use it because it would be cutting off a whole history of research.”


Found in: Body & Brain and Life
Comments 1
  • The association of organic molecules with calcium phosphates in alleged nano-bacteria has great significance for the origins of life. Mathematical biology dealing with metabolic rate and biomass given variations in efficiency of redox coupling between this biomass and energy sources, suggests that it is more likely that life as we know it began or likely from the accretion/concrescence of molecules of this sort than it did from the iron sulfide sphericules described by Russell and Martin in their 2002 Philosophical Transactions of the Royal Society. Such sphericules had no salt bridge to allow for the chemotrophism, and are therefore a bad candidate for the protocell. Yet in the same issue of Transactions the paper by Baymann et al. elaborates upon the redox protein construction kit that also accompanies these hypothesized origins. And it is this construction kit, modeled by Kleiber's Law as modified by Demetrius of Harvard, that what drove the agglomeration of nano organic chemistry to something with a membrane that had channels/salt bridges which allowed for a measurable voltage from inside to outside, and thereby the more effective, more efficient redox coupling for growth of biomass.

    The origins of life are to be found in the math and the energetics of organic chemistry, with calcium phosphates accompanying the trip, acting as the backbone for RNA and DNA, the shell or coral, the skeleton, and the ion that triggers ATP discharge and that is necessary for cellular growth. Calcium phosphate is a key player in the equation because of its affect on biomass, whether of nuclei containing DNA, or of shells on snails. Mass plays a key role increasing the metabolic rate of nuclei in the cells of creatures that function at high metabolic efficiency, where metabolic efficiency is in the exponent of biomass, is the same for the creature as it is for its cells, and is in fact determined by the eating habits of the creature. Parasitic flukes have a smaller genome mass than planarians, though both are flatworms; because the former are embedded in their food supply while the latter are free floating. This means the metabolic efficiency of the former is lower - it gets food more easily - and at lower efficiency things that are as small as nuclei have higher metabolic rates. At higher efficiencies (over 25%) all sizes of biomass increase their metabolic rate if they increase their mass. Voila, higher genome masses (including junk DNA mass) in creatures that function over 25% efficiency - like plants, primates, planarians.

    You should check out the math. It's just chock full of surprises. It explains the affect of caloric restriction on mice longevity, and why cancer is a disease of the aged.
    Gregory O'Kelly Gregory O'Kelly
    May. 13, 2008 at 5:55pm
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Suggested Reading:
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  • Travis, J. 2000. Study casts doubt on minibacteria. Science News 158(Nov. 18):328.
  • ______. 1998. The Bacteria in the Stone: Extra-tiny microorganisms may lead to kidney stones and other diseases Science News 154(August 1):75-77.
  • Multimedia:
    (Requires RealPlayer)
    Videos of “nanons” dissolving after the addition of trypsin, which breaks down protein; EDTA, a chemical that disperses minerals; or in acidic conditions.
    link.
  • Guilfoy C 2008 Symposium to Explore Role Nanoparticles May Play in Disease. The American Physiological Society web site April 2 link Includes podcast.
Citations & References:
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  • Tsurumoto T et al. 2008 Identification of Nanobacteria in Human Arthritic Synovial Fluid by Method Validated in Human Blood and Urine using 200 nm Model Nanoparticles. Environmental Science and Technology. Published online April 2 link.
  • Martel J. and Young, J. D-E. 2008. Purported nanobacteria in human blood as calcium carbonate nanoparticles. Proceedings of the National Academy of Sciences Published online April 2 link.
  • Raoult D et al. 2008. Nanobacteria are Mineralo Fetuin Complexes. PLoS Pathogens 4(Feb. 15): e41. Available at link